GenBank 转 FASTA

格式转换工具

-合并FASTA序列
-EMBL转换FASTA格式
-EMBL序列特征提取器
-EMBL翻译区提取器
-过滤DNA
-过滤蛋白质
-GenBank转换为FASTA
-GenBank序列特征提取器
-GenBank翻译区提取器
-氨基酸单字母到三字母转换
-DNA序列区段提取器
-蛋白序列区段提取器
-反向互补
-密码子分离器
-分割FASTA
-单字母蛋白序列转换
-滑动窗口方式提取DNA序列
-滑动窗口方式提取蛋白序列

序列分析工具

序列图形化分析工具

-颜色法标记DNA/蛋白保守区
-颜色法标记蛋白残基生化相似度
-DNA序列分组格式化
-蛋白序列分组格式化
-引物模板匹配工具
-酶切位点标记图
-DNA翻译图谱

随机序列

-随机突变DNA序列
-随机突变蛋白序列
-随机生成cDNA序列
-随机生成DNA序列
-随机突变特定位置的DNA
-随机生成蛋白序列
-随机突变蛋白序列的特定位置
-DNA随机采样
-蛋白质随机采样
-打乱DNA序列
-打乱蛋白序列

Miscellaneous

-IUPAC编码表
-密码子表
-浏览器兼容性要求
-镜像此网站
-单机使用
-关于
-致谢
-参考文献

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Sequence Manipulation Suite:

GenBank to FASTA

GenBank-FASTA格式转换器，可以将GenBank格式的文件转换成FASTA格式的文件。使用此工具可以快速将DNA以外的信息去除。

输入一条或多条GenBank文件内容，长度限定在200000以内。

LOCUS       SUSFASCIN    2320 bp    mRNA            INV       14-MAR-2000
DEFINITION  Strongylocentrotus purpuratus fascin (FSCN1) mRNA, complete cds.
ACCESSION   L12047
VERSION     L12047.1  GI:161470
KEYWORDS    actin bundling protein; fascin.
SOURCE      Strongylocentrotus purpuratus.
  ORGANISM  Strongylocentrotus purpuratus
            Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea;
            Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae;
            Strongylocentrotus.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Kane,R.E.
  TITLE     Actin polymerization and interaction with other proteins in
            temperature-induced gelation of sea urchin egg extracts
  JOURNAL   J. Cell Biol. 71 (3), 704-714 (1976)
  MEDLINE   77051438
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Bryan,J. and Kane,R.E.
  TITLE     Separation and interaction of the major components of sea urchin
            actin gel
  JOURNAL   J. Mol. Biol. 125 (2), 207-224 (1978)
  MEDLINE   79091184
REFERENCE   3  (bases 1 to 2320)
  AUTHORS   Bryan,J., Edwards,R., Matsudaira,P., Otto,J. and Wulfkuhle,J.
  TITLE     Fascin, an echinoid actin-bundling protein, is a homolog of the
            Drosophila singed gene product
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 90 (19), 9115-9119 (1993)
  MEDLINE   94022326
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Strongylocentrotus purpuratus"
                     /db_xref="taxon:7668"
                     /dev_stage="larva"
     gene            1..2320
                     /gene="FSCN1"
     CDS             85..1575
                     /gene="FSCN1"
                     /function="actin bundling protein"
                     /note="putative"
                     /codon_start=1
                     /product="fascin"
                     /protein_id="AAC37183.1"
                     /db_xref="GI:161471"
                     /translation="MPAMNLKYKFGLVNSAGRYLTAEKFGGKVNASGATLKARQVWIL
                     EQEESSTISYLKAPSGNFLSADKNGNVYCSVEDRTEDADTGFEIELQPDGKWALKNVS
                     HQRYLACNGEELICSESSTSNPSANWTVQLAIHPQVCMKNVQHQRYAHLKTSEEGEDS
                     VVVDELVPWGADSTLTLVYLGKGKYGLEAFNGKFVQTDGQLAGTANEQTQFTLIFTSG
                     HLVLRDNNGRHLGVDSGTRVLKSSKPGLTKANYFILEDSCPQGAFEFGGKYASLKQGE
                     DVSFKLLVDEDIEDTETFQLEFVETDKYAIRVCDPKKNSRDAKFWKTVAAGIQANGNS
                     KDQTDCQFSVEYNGNDMHVRAPGGKYVSVRDNGHLFLQDSPKDFIFRLLNRPKLVLKC
                     PHGFVGMKEGKAEVACNRSNFDVFTVTYKEGGYTIQDSCGKYWSCDDSSRIVLGEAAG
                     TFFFEFHELSKFAIRAESNGMLIKGEQSGLFTANGSEVSKDTLWEF"
     polyA_signal    2155..2160
                     /gene="FSCN1"
ORIGIN      
        1 acttgaaagt ggataaaatc gactgatacc aaaacaacat tgttttacag aagtggtcgt
       61 ttgaggacat caacatattt cacaatgcct gctatgaatt taaaatacaa atttggcctg
      121 gtcaactcgg ccggcagata cctcactgct gagaagtttg gtggcaaagt caatgcctca
      181 ggagcaacgt taaaagccag gcaagtatgg atcctagagc aagaagagag cagcacgatc
      241 agctacttga aggcgccctc tggtaacttc ctctctgcag ataaaaacgg taacgtctat
      301 tgcagtgttg aggacaggac ggaggacgcg gatacaggat tcgagatcga gttgcaaccc
      361 gatggtaaat gggccctcaa gaatgtttct caccagaggt acctagcttg caatggtgag
      421 gagctgatct gcagtgaatc cagcaccagc aacccctcag caaactggac tgtccagctg
      481 gccatccatc cacaggtctg catgaagaac gtccagcacc aacgctacgc acatctcaaa
      541 accagtgagg agggtgaaga cagcgtggtt gtagacgaat tggttccctg gggagctgat
      601 tccacactca ctcttgtcta cctgggcaaa ggaaagtacg gccttgaggc cttcaacgga
      661 aagtttgtcc aaaccgacgg acagcttgct ggcacagcca acgaacagac gcagttcaca
      721 ctcatcttca catccggtca cctggtacta agggacaaca atggacgtca cttaggagtg
      781 gacagtggaa ccagggtctt gaagtcctcc aagcctggac tgacgaaagc caattacttc
      841 atcctagagg atagctgtcc acaaggtgcc ttcgaatttg gtggcaaata tgcatcgtta
      901 aagcaaggcg aagatgtttc attcaagctt cttgttgacg aagatatcga agacacagag
      961 accttccagt tggagttcgt tgaaaccgac aagtatgcca tcagggtatg tgaccccaag
     1021 aagaactcca gagatgctaa gttctggaag accgtcgctg ctggtatcca ggctaacggc
     1081 aactcaaagg accagacgga ctgtcaattc tctgtcgaat acaacggcaa cgacatgcat
     1141 gtgcgtgctc caggaggcaa gtatgttagt gtccgtgaca acggccatct cttccttcag
     1201 gattcaccca aagacttcat cttccgtctg ctcaaccgac ccaagctggt gctcaagtgc
     1261 cctcatggat tcgtgggcat gaaggagggc aaggctgagg tcgcctgcaa ccgatcaaac
     1321 tttgatgtct tcactgtcac ctacaaggaa ggcggataca ctatccaaga ctcctgtggc
     1381 aagtactggt cttgtgatga cagtagccgc atcgttcttg gagaggcagc aggtactttc
     1441 ttcttcgagt tccatgagct ctccaagttt gctatccgag cagaaagcaa cggcatgttg
     1501 atcaagggcg agcagagtgg cttgtttacc gccaatggtt ccgaggtctc aaaggacaca
     1561 ctgtgggaat tctaaacaaa ttgggcttga aagaagccaa atccaaatca gaagtagagt
     1621 agctgacaag ccagccactc tatctattat atcaattgca aatattgtac atttttttaa
     1681 tacaaaaata ttttcaaagg tgcataataa ttatttcata ctctggtggg atctttagga
     1741 tcatattttc tcattgcctt ggcatactga cttccattat ccctcatttt ttaaaaggta
     1801 aattgatcac ttaatatcaa ctgaaaacga aatggaagta ggtctctgga aatttagaag
     1861 aatagatgac tatccagtat attcaaatat ttgttgaacc tgtctcaaaa aaaccccata
     1921 aaaaaccctc tgttttgtgc tgtctcatag ccataaatag agatcaattc tggtggtata
     1981 tgctacttaa aatcaggctt gaaatagaat aaatggaatg gaatggattt tcaaaaagat
     2041 ttggaatttt aaatttgcag ccagtgtccg tgacaactct tgcataccag aagcactaaa
     2101 cagtctctgc cgcaccgctc gcccaggtgt attgttgtga ctgtactttt gaacaataaa
     2161 acagatcttt tcgtcaagtt tggatataaa agtggattga aatgcacgaa tagattcgac
     2221 ttgtataggg catggtggac attgatttta cagatacttt caatataccg gtaaaaatca
     2281 atcatataga aaatgaaaac agggtgtaat atctcaaata 
//

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打开新窗口 | 主页 | 引用 Mon Nov 6 02:56:29 2017

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