GenBank序列特征提取器

格式转换工具

-合并FASTA序列
-EMBL转换FASTA格式
-EMBL序列特征提取器
-EMBL翻译区提取器
-过滤DNA
-过滤蛋白质
-GenBank转换为FASTA
-GenBank序列特征提取器
-GenBank翻译区提取器
-氨基酸单字母到三字母转换
-DNA序列区段提取器
-蛋白序列区段提取器
-反向互补
-密码子分离器
-分割FASTA
-单字母蛋白序列转换
-滑动窗口方式提取DNA序列
-滑动窗口方式提取蛋白序列

序列分析工具

序列图形化分析工具

-颜色法标记DNA/蛋白保守区
-颜色法标记蛋白残基生化相似度
-DNA序列分组格式化
-蛋白序列分组格式化
-引物模板匹配工具
-酶切位点标记图
-DNA翻译图谱

随机序列

-随机突变DNA序列
-随机突变蛋白序列
-随机生成cDNA序列
-随机生成DNA序列
-随机突变特定位置的DNA
-随机生成蛋白序列
-随机突变蛋白序列的特定位置
-DNA随机采样
-蛋白质随机采样
-打乱DNA序列
-打乱蛋白序列

Miscellaneous

-IUPAC编码表
-密码子表
-浏览器兼容性要求
-镜像此网站
-单机使用
-关于
-致谢
-参考文献

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Sequence Manipulation Suite:

GenBank Feature Extractor

GenBank特征提取器可以按照GenBank文件中feature信息定义部分的位置信息，将相应位置的序列截取并拼接，并以FASTA格式输出。在您需要从包含内含子的基因组GenBank文件中获取cDNA的时候，GenBank Feature提取器特别有用。

输入一个或多个GenBank文件内容，长度限定在1000000以内。

LOCUS       AF177870     3123 bp    DNA             INV       31-OCT-1999
DEFINITION  Caenorhabditis remanei putative PP2C protein phosphatase FEM-2
            (fem-2) gene, complete cds.
ACCESSION   AF177870
NID         g6164828
VERSION     AF177870.1  GI:6164828
KEYWORDS    .
SOURCE      Caenorhabditis remanei.
  ORGANISM  Caenorhabditis remanei
            Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
REFERENCE   1  (bases 1 to 3123)
  AUTHORS   Stothard,P.M., Hansen,D. and Pilgrim,D.
  TITLE     Isolation of PP2C sequences using degenerate-oligo PCR
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3123)
  AUTHORS   Stothard,P.M., Hansen,D. and Pilgrim,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-1999) Biological Sciences, University of Alberta,
            Edmonton, AB T6G-2E9, Canada
FEATURES             Location/Qualifiers
     source          1..3123
                     /organism="Caenorhabditis remanei"
                     /db_xref="taxon:31234"
     mRNA            join(<265..402,673..781,911..1007,1088..1215,
                     1377..1573,1866..2146,2306..2634,2683..>2855)
                     /gene="fem-2"
                     /product="putative FEM-2 protein phosphatase type 2C"
     gene            <265..>2855
                     /gene="fem-2"
     CDS             join(265..402,673..781,911..1007,1088..1215,1377..1573,
                     1866..2146,2306..2634,2683..2855)
                     /gene="fem-2"
                     /note="possible sex-determining protein"
                     /codon_start=1
                     /product="putative PP2C protein phosphatase FEM-2"
                     /protein_id="AAF04557.1"
                     /db_xref="PID:g6164829"
                     /db_xref="GI:6164829"
                     /translation="MSDSLNHPSSSTVHADDGFEPPTSPEDNNKKPSLEQIKQEREAL
                     FTDLFADRRRSARSVIEEAFQNELMSAEPVQPNVPNPHSIPIRFRHQPVAGPAHDVFG
                     DAVHSIFQKIMSRGVNADYSHWMSYWIALGIDKKTQMNYHMKPFCKDTYATEGSLEAK
                     QTFTDKIRSAVEEIIWKSAEYCDILSEKWTGIHVSADQLKGQRNKQEDRFVAYPNGQY
                     MNRGQSDISLLAVFDGHGGHECSQYAAAHFWEAWSDAQHHHSQDMKLDELLEKALETL
                     DERMTVRSVRESWKGGTTAVCCAVDLNTNQIAFAWLGDSPGYIMSNLEFRKFTTEHSP
                     SDPEECRRVEEVGGQIFVIGGELRVNGVLNLTRALGDVPGRPMISNKPDTLLKTIEPA
                     DYLVLLACDGISDVFNTSDLYNLVQAFVNEYDVEDYHELARYICNQAVSAGSADNVTV
                     VIGFLRPPEDVWRVMKTDSDDEESELEEEDDNE"
ORIGIN      
        1 gaacgcgaat gcctctctct ctttcgatgg gtatgccaat tgtccacatt cactcgtgtt
       61 gcctcctctt tgccaacacg caagacacca gaaacgcgtc aaccaaagag aaaaagacgc
      121 cgacaacggg cagcactcgc gagagacaaa ggttatcgcg ttgtgttatt atacattcgc
      181 atccgggtca actttagtcc gttgaacatg cttcttgaaa acctagttct cttaaaataa
      241 cgttttagaa gttttggtct tcagatgtct gattcgctaa atcatccatc gagttctacg
      301 gtgcatgcag atgatggatt cgagccacca acatctccgg aagacaacaa caaaaaaccg
      361 tctttagaac aaattaaaca ggaaagagaa gcgttgttta cggttagtta cctattagct
      421 gcaagttttg aaaaagcgga atctgtaaaa agcggaatct gtaaaaaaaa catctaagga
      481 ataattctga aaagaaaaag tttctaaatg ttaatcggaa tccaattttt atgaaattat
      541 ttaaaaaaaa actaaaatta gtttctaaaa aatttttcta aagtaattgg accatgtgaa
      601 ggtacaccca cttgttccaa tatgccatat ctaactgtaa aataatttga ttctcatgag
      661 aatatttttc aggatctatt cgcagatcgt cgacgaagcg ctcgttctgt gattgaagaa
      721 gctttccaaa acgaactcat gagtgctgaa ccagtccagc caaacgtgcc gaatccacat
      781 tgtgagttgg aaatttttat ttgataacca agagaaaaaa agttctacct ttttttcaaa
      841 aacctttcca aaaatgattc catctgatat aggattaaga aaaatatttt ccgaaatctc
      901 tgcttttcag cgattcccat tcgtttccgt catcaaccag ttgctggacc tgctcatgat
      961 gttttcggag acgcggtgca ttcaattttt caaaaaataa tgtccaggta tacactattt
     1021 ttgcatattt ttcttgccaa atttggtcaa aaaccgtagt acaacccaaa aagtttcttc
     1081 atttcagagg agtgaacgcg gattatagtc attggatgtc atattggatc gcgttgggaa
     1141 tcgacaaaaa aacacaaatg aactatcata tgaaaccgtt ttgcaaagat acttatgcaa
     1201 ctgaaggctc cttaggtagg ttagtctttt ctaggcacag aagagtgaga aaattctaaa
     1261 tttctgagca gtctgctttt tgttttcctt gagtttttac ttaaagctct taaaagaaat
     1321 ctaggcgtga agttcgagcc ttgtaccata ccacaacagc attccaaatg ttacagaagc
     1381 gaaacaaaca tttactgata aaatcaggtc agctgttgag gaaattatct ggaagtccgc
     1441 tgaatattgt gatattctta gcgagaagtg gacaggaatt catgtgtcgg ccgaccaact
     1501 gaaaggtcaa agaaataagc aagaagatcg ttttgtggct tatccaaatg gacaatacat
     1561 gaatcgtgga caggttagtg cgaatcgggg actcaagatt tactgaaata gtgaagagaa
     1621 aacaaaagaa aactatattt tcaaaaaaaa tgagaactct aataaacaga atgaaaaaca
     1681 ttcaaagcta cagtagtatt tccagctgga gtttccagag ccaaaaaaat gcgagtatta
     1741 ctgtagtttt gaaattggtt tctcacttta cgtacgattt tttgattttt ttttcagact
     1801 cttcatatga aaaaaaatca tgttttctcc tttacaagat ttttttgatc tcaaaacatt
     1861 tccagagtga catttcactt cttgcggtgt tcgatgggca tggcggacac gagtgctctc
     1921 aatatgcagc tgctcatttc tgggaagcat ggtccgatgc tcaacatcat cattcacaag
     1981 atatgaaact tgacgaactc ctagaaaagg ctctagaaac attggacgaa agaatgacag
     2041 tcagaagtgt tcgagaatct tggaaaggtg gaaccactgc tgtctgctgt gctgttgatt
     2101 tgaacactaa tcaaatcgca tttgcctggc ttggagattc accagggtaa tcaatttttt
     2161 tttagttttt ggaactttac gtcccgaaaa attattcctt tatcacctaa ttcctacagt
     2221 aacccaagct ccgaattaaa taaagttaaa gcgtggtata cacataaaaa taagaaaaaa
     2281 ttgttcatga aatccatttt tccagttaca tcatgtcaaa cttggagttc cgcaaattca
     2341 ctactgaaca ctccccgtct gacccggagg aatgtcgacg agtcgaagaa gtcggtggcc
     2401 agatttttgt gatcggtggt gagctccgtg tgaatggagt actcaacctg acgcgagcac
     2461 taggagacgt acctggaaga ccaatgatat ccaacaaacc tgatacctta ctgaagacga
     2521 tcgaacctgc ggattatctt gttttgttgg cctgtgacgg gatttctgac gtcttcaaca
     2581 ctagtgattt gtacaatttg gttcaggctt ttgtcaatga atatgacgta gaaggtatca
     2641 aactgatcgt ttttcacatc acaaaattct tgaattttcc agattatcac gaacttgcac
     2701 gctacatttg caatcaagca gtttcagctg gaagtgctga caatgtgaca gtagttatag
     2761 gtttcctccg tccaccagaa gacgtttggc gtgtaatgaa aacagactcg gatgatgaag
     2821 agagcgagct cgaggaagaa gatgacaatg aatagtttat tgcaagtttt ccaaaacttt
     2881 tccaatttcc ctgggtattg attagcatcc atatcttacg gcgattatat caattgtaac
     2941 attatttctg tttctccccc cacctctcaa attttcaaat gacccttttt cttttcgtct
     3001 acctgtatcg ttttccattc atctcccccc ctccactgtg gtatatcatt ttgtcattag
     3061 aaagtattat tttgattttc attggcagta gaagacaaca ggatacagaa gaggttttca
     3121 cag
//

Sequence features should be

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打开新窗口 | 主页 | 引用 Mon Nov 6 02:56:29 2017

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